3JZB Transcription date Sep 23, 2009
title Crystal Structure Of Tr-Alfa Bound To The Selective Thyromim
authors A.S.Nascimento, S.M.G.Dias, F.M.Nunes, R.Aparicio
compound source
Molecule: Thra Protein
Chain: A
Fragment: Unp Residues 148-410, Ligand Binding Domain
Synonym: Thyroid Hormone Receptor, Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thra, Hcg_1749555
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_plasmid: Pet28(A)
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.020 80.825 102.355 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand 4HY, CAS BindingDB enzyme
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGaining ligand selectivity in thyroid hormone receptors via entropy., Martinez L, Nascimento AS, Nunes FM, Phillips K, Aparicio R, Dias SM, Figueira AC, Lin JH, Nguyen P, Apriletti JW, Neves FA, Baxter JD, Webb P, Skaf MS, Polikarpov I, Proc Natl Acad Sci U S A. 2009 Nov 19. PMID:19926848
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3jzb.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 3JZB
  • CSU: Contacts of Structural Units for 3JZB
  • Structure Factors (234 Kb)
  • Retrieve 3JZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JZB from S2C, [Save to disk]
  • Re-refined 3jzb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JZB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JZB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jzb_A] [3jzb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3JZB: [HOLI ] by SMART
  • Other resources with information on 3JZB
  • Community annotation for 3JZB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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