3JZG Gene Regulation date Sep 23, 2009
title Structure Of Eed In Complex With H3k27me3
authors C.Xu, C.B.Bian, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards A.Bochkarev, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Polycomb Protein Eed
Chain: A
Fragment: Unp Residue 40-441
Synonym: Heed, Wd Protein Associating With Integrin Cytopla 1, Wait-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.775 85.263 91.169 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand M3L enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • histone methyltransferase ac...


    • Primary referenceBinding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2)., Xu C, Bian C, Yang W, Galka M, Ouyang H, Chen C, Qiu W, Liu H, Jones AE, Mackenzie F, Pan P, Li SS, Wang H, Min J, Proc Natl Acad Sci U S A. 2010 Oct 25. PMID:20974918
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3jzg.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3JZG
  • CSU: Contacts of Structural Units for 3JZG
  • Structure Factors (399 Kb)
  • Retrieve 3JZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JZG from S2C, [Save to disk]
  • Re-refined 3jzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JZG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JZG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jzg] [3jzg_B] [3jzg_A]
  • SWISS-PROT database: [O75530]
  • Domain organization of [EED_HUMAN] by SWISSPFAM
  • Domain found in 3JZG: [WD40 ] by SMART
    • Other resources with information on 3JZG
  • Community annotation for 3JZG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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