3K0S Dna Binding Protein Dna date Sep 25, 2009
title Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts Mutant, In Complex With Gt Mismatched Dna
authors G.A.Reumer, H.H.K.Winterwerp, T.K.Sixma
compound source
Molecule: Dna Mismatch Repair Protein Muts
Chain: A, B
Fragment: Unp Residues 2-800
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Gene: B2733, Fdv, Jw2703, Muts
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3d

Molecule: 5'-D(Apgpcptpgpcpcpapgpgpcpapcpcpa Tpcpapgpcpgptpcpcptpapt)-3';
Chain: E
Engineered: Yes
Other_details: 30mer Dna, G Containing

Synthetic: Yes
Other_details: Synthetic Construct

Molecule: 5'-D(Aptpapgpgpapcpgpcptpgpapcapcp Pgpcptptpgpgpcpapgpcpt)-3';
Chain: F
Engineered: Yes
Other_details: 30mer Dna, T Containing

Synthetic: Yes
Other_details: Synthetic Construct
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.604 90.791 261.191 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMagnesium coordination controls the molecular switch function of DNA mismatch repair protein muts., Lebbink JH, Fish A, Reumer A, Natrajan G, Winterwerp HH, Sixma TK, J Biol Chem. 2010 Feb 18. PMID:20167596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (547 Kb) [Save to disk]
  • Biological Unit Coordinates (3k0s.pdb1.gz) 539 Kb
  • LPC: Ligand-Protein Contacts for 3K0S
  • CSU: Contacts of Structural Units for 3K0S
  • Structure Factors (1336 Kb)
  • Retrieve 3K0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K0S from S2C, [Save to disk]
  • Re-refined 3k0s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K0S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K0S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k0s_B] [3k0s_F] [3k0s] [3k0s_E] [3k0s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3K0S: [MUTSac] [MUTSd ] by SMART
  • Other resources with information on 3K0S
  • Community annotation for 3K0S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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