3K0W Hydrolase date Sep 25, 2009
title Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1
authors J.R.Walker, L.Qiu, C.Butler-Cole, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics Consortium (Sgc)
compound source
Molecule: Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1, Isoform 2;
Chain: A
Fragment: Tandem Ig-Like C2-Type 2 Domain: Unp Residues 128-326;
Synonym: Malt Lymphoma-Associated Translocation, Paracaspase;
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Malt1, Mlt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 62 2 2
R_factor 0.218 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.355 90.355 182.173 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand CL enzyme Hydrolase E.C.3.4.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3k0w.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (3k0w.pdb2.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 3K0W
  • CSU: Contacts of Structural Units for 3K0W
  • Structure Factors (240 Kb)
  • Retrieve 3K0W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K0W from S2C, [Save to disk]
  • Re-refined 3k0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K0W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K0W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3K0W, from MSDmotif at EBI
  • Fold representative 3k0w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k0w] [3k0w_A]
  • SWISS-PROT database: [Q9UDY8]
  • Domain organization of [MALT1_HUMAN] by SWISSPFAM
  • Domains found in 3K0W: [IG_like] [IGc2 ] by SMART
  • Other resources with information on 3K0W
  • Community annotation for 3K0W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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