3K1J Hydrolase date Sep 28, 2009
title Crystal Structure Of Lon Protease From Thermococcus Onnurine
authors S.S.Cha, Y.J.An
compound source
Molecule: Atp-Dependent Protease Lon
Chain: A, B
Synonym: Lon Protease
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermococcus Onnurineus
Organism_taxid: 523850
Strain: Na1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63
R_factor 0.206 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.454 121.454 195.240 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand ADP, PE4, PE8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of Lon protease: molecular architecture of gated entry to a sequestered degradation chamber., Cha SS, An YJ, Lee CR, Lee HS, Kim YG, Kim SJ, Kwon KK, De Donatis GM, Lee JH, Maurizi MR, Kang SG, EMBO J. 2010 Oct 20;29(20):3520-30. Epub 2010 Sep 10. PMID:20834233
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (3k1j.pdb1.gz) 574 Kb
  • LPC: Ligand-Protein Contacts for 3K1J
  • CSU: Contacts of Structural Units for 3K1J
  • Structure Factors (1235 Kb)
  • Retrieve 3K1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K1J from S2C, [Save to disk]
  • Re-refined 3k1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K1J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k1j] [3k1j_A] [3k1j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3K1J: [AAA ] by SMART
  • Other resources with information on 3K1J
  • Community annotation for 3K1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science