3K1Z Hydrolase date Sep 29, 2009
title Crystal Structure Of Human Haloacid Dehalogenase-Like Hydrol Containing 3 (Hdhd3)
authors E.Ugochukwu, K.Guo, W.W.Yue, E.Pilka, S.Picaud, J.Muniz, A.C.W.Pik T.Krojer, M.Gomes, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Wei A.Edwards, K.Kavanagh, U.Oppermann, Structural Genomics Consor (Sgc)
compound source
Molecule: Haloacid Dehalogenase-Like Hydrolase Domain-Conta Protein 3;
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Hdhd3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf
symmetry Space Group: P 21 21 21
R_factor 0.167 R_Free 0.207
length a length b length c angle alpha angle beta angle gamma
51.625 62.455 79.665 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand EDO, GOL, MSE enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3k1z.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3K1Z
  • CSU: Contacts of Structural Units for 3K1Z
  • Structure Factors (541 Kb)
  • Retrieve 3K1Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K1Z from S2C, [Save to disk]
  • Re-refined 3k1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K1Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3K1Z, from MSDmotif at EBI
  • Fold representative 3k1z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k1z] [3k1z_A]
  • SWISS-PROT database: [Q9BSH5]
  • Domain organization of [HDHD3_HUMAN] by SWISSPFAM
  • Other resources with information on 3K1Z
  • Community annotation for 3K1Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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