3K2E Oxidoreductase date Sep 30, 2009
title Crystal Structure Of Enoyl-(Acyl-Carrier-Protein) Reductase Anaplasma Phagocytophilum At 1.9a Resolution
authors J.Abendroth, B.Staker, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
compound source
Molecule: Enoyl-(Acyl-Carrier-Protein) Reductase
Chain: A, B
Ec: 1.3.1.9
Engineered: Yes
Organism_scientific: Anaplasma Phagocytophilum
Organism_taxid: 948
Gene: Fabi, Aph_0473
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: P 21 21 2
R_factor 0.151 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.000 89.400 78.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, GOL enzyme Oxidoreductase E.C.1.3.1.9 BRENDA
Gene APH
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (3k2e.pdb1.gz) 326 Kb
  • Biological Unit Coordinates (3k2e.pdb2.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 3K2E
  • CSU: Contacts of Structural Units for 3K2E
  • Structure Factors (669 Kb)
  • Retrieve 3K2E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K2E from S2C, [Save to disk]
  • Re-refined 3k2e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K2E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K2E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K2E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k2e_A] [3k2e] [3k2e_B]
  • SWISS-PROT database: [Q2GKM8]
  • Domain organization of [Q2GKM8_ANAPZ] by SWISSPFAM
  • Other resources with information on 3K2E
  • Community annotation for 3K2E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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