3K2F Lyase date Sep 30, 2009
title Nitric Oxide-Donating Carbonic Anhydrase Inhibitors For The Of Open-Angle Glaucoma
authors C.Temperini, A.Cecchi
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Carbonate Dehydratase II, C Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.630 42.010 71.460 90.00 104.40 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand HG, NKX, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNitric oxide-donating carbonic anhydrase inhibitors for the treatment of open-angle glaucoma., Steele RM, Benedini F, Biondi S, Borghi V, Carzaniga L, Impagnatiello F, Miglietta D, Chong WK, Rajapakse R, Cecchi A, Temperini C, Supuran CT, Bioorg Med Chem Lett. 2009 Dec 1;19(23):6565-70. Epub 2009 Oct 13. PMID:19854054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3k2f.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3K2F
  • CSU: Contacts of Structural Units for 3K2F
  • Structure Factors (281 Kb)
  • Retrieve 3K2F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K2F from S2C, [Save to disk]
  • Re-refined 3k2f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K2F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K2F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K2F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k2f] [3k2f_A]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 3K2F: [Carb_anhydrase ] by SMART
    • Other resources with information on 3K2F
  • Community annotation for 3K2F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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