3K3J Transferase date Oct 02, 2009
title P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
authors S.L.Kazmirski, J.P.Dinitto
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.179 74.722 77.733 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand F4C, I46 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Design, Synthesis and Potential Utility of Fluorescence Probes that Target DFG-out Conformation of p38alpha for High Throughput Screening Binding Assay., Tecle H, Feru F, Liu H, Kuhn C, Rennie G, Morris M, Shao J, Cheng AC, Gikunju D, Miret J, Coli R, Xi SH, Clugston SL, Low S, Kazmirski S, Ding YH, Cao Q, Johnson TL, Deshmukh GD, Dinitto JP, Wu JC, English JM, Chem Biol Drug Des. 2009 Oct 20. PMID:19843080
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3k3j.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3K3J
  • CSU: Contacts of Structural Units for 3K3J
  • Structure Factors (344 Kb)
  • Retrieve 3K3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K3J from S2C, [Save to disk]
  • Re-refined 3k3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K3J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K3J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k3j_A] [3k3j]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3K3J: [S_TKc ] by SMART
  • Other resources with information on 3K3J
  • Community annotation for 3K3J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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