3K4B Oxidoreductase date Oct 05, 2009
title Pyranose 2-Oxidase T169s Mutant
authors C.Divne, T.C.Tan
compound source
Molecule: Pyranose 2-Oxidase
Chain: A
Synonym: Pyranose Oxidase
Ec: 1.1.3.10
Engineered: Yes
Mutation: Yes
Organism_scientific: Trametes Ochracea
Organism_common: White-Rot Fungus
Organism_taxid: 230624
Gene: P2o
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21(D+)
symmetry Space Group: P 42 21 2
R_factor 0.206 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.950 101.950 127.626 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FAD enzyme Oxidoreductase E.C.1.1.3.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA conserved active-site threonine is important for both sugar and flavin oxidations of pyranose 2-oxidase., Pitsawong W, Sucharitakul J, Prongjit M, Tan TC, Spadiut O, Haltrich D, Divne C, Chaiyen P, J Biol Chem. 2010 Jan 20. PMID:20089849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3k4b.pdb1.gz) 383 Kb
  • LPC: Ligand-Protein Contacts for 3K4B
  • CSU: Contacts of Structural Units for 3K4B
  • Structure Factors (802 Kb)
  • Retrieve 3K4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K4B from S2C, [Save to disk]
  • Re-refined 3k4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K4B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K4B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k4b] [3k4b_A]
  • SWISS-PROT database: [Q7ZA32]
  • Domain organization of [Q7ZA32_TRAOC] by SWISSPFAM
  • Other resources with information on 3K4B
  • Community annotation for 3K4B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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