3K5T Oxidoreductase date Oct 08, 2009
title Crystal Structure Of Human Diamine Oxidase In Space Group C2
authors A.P.Mcgrath, J.M.Guss
compound source
Molecule: Diamine Oxidase
Chain: A
Synonym: Amiloride-Sensitive Amine Oxidase [Copper-Containi Amiloride-Binding Protein, Abp, Histaminase, Kidney Amine O Kao;
Ec: 1.4.3.22
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abp1, Aoc1, Dao1
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: Drosophila Schneider 2 (S2)
symmetry Space Group: C 2 2 21
R_factor 0.236 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.771 96.954 178.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.11 Å
ligand CA, CU, GOL, NAG, TPQ enzyme Oxidoreductase E.C.1.4.3.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA new crystal form of human diamine oxidase., McGrath AP, Hilmer KM, Collyer CA, Dooley DM, Guss JM, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Feb 1;66(Pt 2):137-42., Epub 2010 Jan 27. PMID:20124708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (3k5t.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 3K5T
  • CSU: Contacts of Structural Units for 3K5T
  • Structure Factors (734 Kb)
  • Retrieve 3K5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K5T from S2C, [Save to disk]
  • Re-refined 3k5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K5T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3K5T, from MSDmotif at EBI
  • Fold representative 3k5t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k5t] [3k5t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3K5T
  • Community annotation for 3K5T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science