3K5T Oxidoreductase date Oct 08, 2009
title Crystal Structure Of Human Diamine Oxidase In Space Group C2
authors A.P.Mcgrath, J.M.Guss
compound source
Molecule: Diamine Oxidase
Chain: A
Synonym: Amiloride-Sensitive Amine Oxidase [Copper-Containi Amiloride-Binding Protein, Abp, Histaminase, Kidney Amine O Kao;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abp1, Aoc1, Dao1
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: Drosophila Schneider 2 (S2)
symmetry Space Group: C 2 2 21
R_factor 0.236 R_Free 0.290
length a length b length c angle alpha angle beta angle gamma
94.771 96.954 178.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.11 Å
ligand CA, CU, GOL, NAG, TPQ enzyme Oxidoreductase E.C. BRENDA

Primary referenceA new crystal form of human diamine oxidase., McGrath AP, Hilmer KM, Collyer CA, Dooley DM, Guss JM, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Feb 1;66(Pt 2):137-42., Epub 2010 Jan 27. PMID:20124708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (3k5t.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 3K5T
  • CSU: Contacts of Structural Units for 3K5T
  • Structure Factors (734 Kb)
  • Retrieve 3K5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K5T from S2C, [Save to disk]
  • Re-refined 3k5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K5T in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K5T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3K5T, from MSDmotif at EBI
  • Fold representative 3k5t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k5t] [3k5t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3K5T
  • Community annotation for 3K5T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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