3K6A Structural Genomics, Unknown Function date Oct 08, 2009
title Crystal Structure Of Molybdenum Cofactor Biosynthesis Protei Shewanella Oneidensis
authors C.Chang, L.Bigelow, A.Joachimiak, Midwest Center For Structural (Mcsg)
compound source
Molecule: Molybdenum Cofactor Biosynthesis Protein Mog
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Shewanella Oneidensis
Organism_taxid: 70863
Gene: Mog, So_0065
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Derivative
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.132 66.310 74.332 92.15 103.64 119.98
method X-Ray Diffractionresolution 1.89 Å
ligand MSE, NA enzyme
note 3K6A supersedes 2FUW
Gene SO
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (3k6a.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (3k6a.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3K6A
  • CSU: Contacts of Structural Units for 3K6A
  • Structure Factors (1603 Kb)
  • Retrieve 3K6A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K6A from S2C, [Save to disk]
  • Re-refined 3k6a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K6A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K6A, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k6a_A] [3k6a] [3k6a_B] [3k6a_F] [3k6a_D] [3k6a_C] [3k6a_E]
  • SWISS-PROT database: [Q8EKM7]
  • Domain organization of [Q8EKM7_SHEON] by SWISSPFAM
  • Domain found in 3K6A: [MoCF_biosynth ] by SMART
    • Other resources with information on 3K6A
  • Community annotation for 3K6A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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