3K6C Structural Genomics, Unknown Function date Oct 08, 2009
title Crystal Structure Of Protein Ne0167 From Nitrosomonas Europa
authors C.Chang, E.Evdokimova, A.Savchenko, A.M.Edwards, A.Joachimiak, Mi Center For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein Ne0167
Chain: A, B, C, D, E, F, G, H, I, J
Engineered: Yes
 Organism_scientific: Nitrosomonas Europaea
Organism_taxid: 915
Strain: Atcc 19718
Gene: Ne0167
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.417 134.551 78.458 90.00 96.24 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE enzyme
note 3K6C is a representative structure and supersedes 1ZPY
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (3k6c.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 3K6C
  • CSU: Contacts of Structural Units for 3K6C
  • Structure Factors (611 Kb)
  • Retrieve 3K6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K6C from S2C, [Save to disk]
  • Re-refined 3k6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K6C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K6C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k6c_A] [3k6c_C] [3k6c_B] [3k6c_I] [3k6c_G] [3k6c_H] [3k6c_D] [3k6c_J] [3k6c_E] [3k6c_F] [3k6c]
  • SWISS-PROT database: [Q82XT5]
  • Domain organization of [Q82XT5_NITEU] by SWISSPFAM
    • Other resources with information on 3K6C
  • Community annotation for 3K6C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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