3K6P Hormone Receptor date Oct 09, 2009
title Estrogen Related Receptor Alpha In Complex With An Ether Bas
authors M.C.Abad, R.J.Patch
compound source
Molecule: Steroid Hormone Receptor Err1
Chain: A
Fragment: Ligand Binding Domain
Synonym: Estrogen-Related Receptor, Alpha, Err-Alpha, Estro Receptor-Like 1, Nuclear Receptor Subfamily 3 Group B Membe
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Err1, Esrl1, Esrra, Nr3b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: T7 Pet Vector
Expression_system_plasmid: Pet28a
symmetry Space Group: P 65 2 2
R_factor 0.211 R_Free 0.248
length a length b length c angle alpha angle beta angle gamma
103.007 103.007 110.017 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand 5FB enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3k6p.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3k6p.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3K6P
  • CSU: Contacts of Structural Units for 3K6P
  • Structure Factors (186 Kb)
  • Retrieve 3K6P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K6P from S2C, [Save to disk]
  • Re-refined 3k6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3K6P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3K6P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3K6P, from MSDmotif at EBI
  • Fold representative 3k6p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k6p] [3k6p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3K6P: [HOLI ] by SMART
  • Other resources with information on 3K6P
  • Community annotation for 3K6P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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