3K85 Transferase date Oct 13, 2009
title Crystal Structure Of A D-Glycero-D-Manno-Heptose 1-Phosphate From Bacteriodes Thetaiotaomicron
authors K.Palani, D.Kumaran, S.K.Burley, S.Swaminathan, New York Sgx Res Center For Structural Genomics (Nysgxrc)
compound source
Molecule: D-Glycero-D-Manno-Heptose 1-Phosphate Kinase
Chain: A, B
Engineered: Yes
 Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818
Gene: Bt-0704, Bt_0474
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3 (Bc)
symmetry Space Group: C 2 2 21
R_factor 0.254 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.889 149.469 141.088 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand MSE enzyme
Gene BT
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3k85.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (3k85.pdb2.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 3K85
  • CSU: Contacts of Structural Units for 3K85
  • Structure Factors (329 Kb)
  • Retrieve 3K85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K85 from S2C, [Save to disk]
  • Re-refined 3k85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K85
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K85, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k85] [3k85_A] [3k85_B]
  • SWISS-PROT database: [Q8AAJ0]
  • Domain organization of [Q8AAJ0_BACTN] by SWISSPFAM
    • Other resources with information on 3K85
  • Community annotation for 3K85 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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