3KAC Isomerase date Oct 19, 2009
title Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inh
authors L.M.Baker, P.Dokurno, D.A.Robinson, A.E.Surgenor, J.B.Murray, A.J J.D.Moore
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact
Chain: A, B
Fragment: Residues 45-163, Pin1 Ppiase Domain
Synonym: Rotamase Pin1, Ppiase Pin1
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pin1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.168 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.064 36.576 51.328 90.00 101.11 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 4BX BindingDB enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-guided design of alpha-amino acid-derived Pin1 inhibitors., Potter AJ, Ray S, Gueritz L, Nunns CL, Bryant CJ, Scrace SF, Matassova N, Baker L, Dokurno P, Robinson DA, Surgenor AE, Davis B, Murray JB, Richardson CM, Moore JD, Bioorg Med Chem Lett. 2009 Nov 22. PMID:19969456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3kac.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3kac.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 3KAC
  • CSU: Contacts of Structural Units for 3KAC
  • Structure Factors (217 Kb)
  • Retrieve 3KAC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KAC from S2C, [Save to disk]
  • Re-refined 3kac structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KAC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KAC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KAC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kac_A] [3kac_B] [3kac]
  • SWISS-PROT database: [Q13526]
  • Domain organization of [PIN1_HUMAN] by SWISSPFAM
  • Other resources with information on 3KAC
  • Community annotation for 3KAC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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