3KBQ Structural Genomics, Unknown Function date Oct 20, 2009
title The Crystal Structure Of The Protein Cina With Unknown Funct Thermoplasma Acidophilum
authors R.Zhang, H.Li, J.Bearden, A.Joachimiak, Midwest Center For Struc Genomics (Mcsg)
compound source
Molecule: Protein Ta0487
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermoplasma Acidophilum
Organism_taxid: 2303
Strain: Dsm1728
Gene: Gi:10639657, Ta0487
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 21 21 2
R_factor 0.203 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.596 39.718 55.946 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3kbq.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3KBQ
  • CSU: Contacts of Structural Units for 3KBQ
  • Structure Factors (163 Kb)
  • Retrieve 3KBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KBQ from S2C, [Save to disk]
  • Re-refined 3kbq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KBQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KBQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kbq_A] [3kbq_B] [3kbq]
  • SWISS-PROT database: [Q9HKV6]
  • Domain organization of [Y487_THEAC] by SWISSPFAM
  • Domain found in 3KBQ: [MoCF_biosynth ] by SMART
    • Other resources with information on 3KBQ
  • Community annotation for 3KBQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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