3KC2 Hydrolase date Oct 20, 2009
title Crystal Structure Of Mitochondrial Had-Like Phosphatase From Saccharomyces Cerevisiae
authors B.Nocek, E.Evdokimova, K.Kuznetsova, A.Iakunine, A.Savchenko, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein Ykr070w
Chain: A, B
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Ykr070w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pmagic
symmetry Space Group: C 1 2 1
R_factor 0.144 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.734 67.095 76.899 90.00 110.45 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand MG, MSE, PO4 enzyme
note 3KC2 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (3kc2.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3KC2
  • CSU: Contacts of Structural Units for 3KC2
  • Structure Factors (1457 Kb)
  • Retrieve 3KC2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KC2 from S2C, [Save to disk]
  • Re-refined 3kc2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KC2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KC2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KC2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m3kc2, region C:269-392 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kc2_A] [3kc2] [3kc2_B]
  • SWISS-PROT database: [P36151]
  • Domain organization of [YK50_YEAST] by SWISSPFAM
    • Other resources with information on 3KC2
  • Community annotation for 3KC2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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