3KCF Transferase date Oct 21, 2009
title Crystal Structure Of Tgfbri Complexed With A Pyrazolone Inhibitor
authors P.A.Boriack-Sjodin
compound source
Molecule: Tgf-Beta Receptor Type-1
Chain: A, B, C, D, E
Fragment: Unp Residues 162-503, Gs And Kinase Domains
Synonym: Transforming Growth Factor-Beta Receptor Type I, Tgf-Beta Receptor Type I, Tgf-Beta Type I Receptor, Tbetar- I, Tgfr-1, Serinethreonine-Protein Kinase Receptor R4, Skr4, Activin Receptor-Like Kinase 5, Alk-5;
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbr1, Tgfbri
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 2 2 21
R_factor 0.235 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.025 249.076 138.011 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand JZO, PO4 BindingDB enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referencePyrazolone based TGFbetaR1 kinase inhibitors., Guckian K, Carter MB, Lin EY, Choi M, Sun L, Boriack-Sjodin PA, Chuaqui C, Lane B, Cheung K, Ling L, Lee WC, Bioorg Med Chem Lett. 2009 Oct 29. PMID:19914068
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (3kcf.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3kcf.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (3kcf.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (3kcf.pdb4.gz) 58 Kb
  • Biological Unit Coordinates (3kcf.pdb5.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3KCF
  • CSU: Contacts of Structural Units for 3KCF
  • Structure Factors (648 Kb)
  • Retrieve 3KCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KCF from S2C, [Save to disk]
  • Re-refined 3kcf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KCF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KCF, from MSDmotif at EBI
  • Fold representative 3kcf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kcf_B] [3kcf_C] [3kcf_E] [3kcf_A] [3kcf_D] [3kcf]
  • SWISS-PROT database: [P36897]
  • Domain organization of [TGFR1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 3KCF with the sequences similar proteins can be viewed for 3KCF's classification [TGFR1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TGFR1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3KCF
  • Community annotation for 3KCF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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