3KCI Ligase date Oct 21, 2009
title The Third Rld Domain Of Herc2
authors J.R.Walker, L.Qiu, A.Vesterberg, J.Weigelt, C.Bountra, C.H.Arrows A.M.Edwards, A.Bochkarev, S.Dhe-Paganon
compound source
Molecule: Probable E3 Ubiquitin-Protein Ligase Herc2
Chain: A
Fragment: Unp Residues 3951-4321, Rcc1-Like Domain
Synonym: Hect Domain And Rcc1-Like Domain-Containing Protei
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: D15f37s1, Dkfzp547p028, Herc2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 61
R_factor 0.152 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.673 52.673 215.242 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3kci.pdb1.gz) 98 Kb
  • CSU: Contacts of Structural Units for 3KCI
  • Structure Factors (445 Kb)
  • Retrieve 3KCI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KCI from S2C, [Save to disk]
  • Re-refined 3kci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KCI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KCI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KCI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kci] [3kci_A]
  • SWISS-PROT database: [O95714]
  • Domain organization of [HERC2_HUMAN] by SWISSPFAM
    • Other resources with information on 3KCI
  • Community annotation for 3KCI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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