3KCN Lyase date Oct 21, 2009
title The Crystal Structure Of Adenylate Cyclase From Rhodopirellu
authors Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Adenylate Cyclase Homolog
Chain: A, B
Engineered: Yes
Organism_scientific: Rhodopirellula Baltica
Organism_taxid: 265606
Strain: Complete Proteome
Gene: Cyaa, Rb11090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)-Codon +Ril -Stratagene
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3 (Bc)
symmetry Space Group: P 21 21 2
R_factor 0.217 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.930 103.096 33.867 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3kcn.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3KCN
  • CSU: Contacts of Structural Units for 3KCN
  • Structure Factors (704 Kb)
  • Retrieve 3KCN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KCN from S2C, [Save to disk]
  • Re-refined 3kcn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KCN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KCN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KCN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kcn_B] [3kcn_A] [3kcn]
  • SWISS-PROT database: [Q7UJS6]
  • Domain organization of [Q7UJS6_RHOBA] by SWISSPFAM
  • Domain found in 3KCN: [REC ] by SMART
  • Other resources with information on 3KCN
  • Community annotation for 3KCN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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