3KD0 Oxidoreductase date Oct 22, 2009
title Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Bound To The Active Site
authors G.Hall, J.Emsley
compound source
Molecule: Thioredoxin
Chain: A
Synonym: Trx, Atl-Derived Factor, Adf, Surface-Associated S Protein, Sasp;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Htrx-1, Trdx, Trx, Trx1, Txn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petblue-1
symmetry Space Group: P 61 2 2
R_factor 0.232 R_Free 0.279
length a length b length c angle alpha angle beta angle gamma
53.635 53.635 154.148 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand CD, CL enzyme
  • thioredoxin-disulfide reduct...
  • positive regulation of pepti...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (3kd0.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3kd0.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3KD0
  • CSU: Contacts of Structural Units for 3KD0
  • Structure Factors (219 Kb)
  • Retrieve 3KD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KD0 from S2C, [Save to disk]
  • Re-refined 3kd0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 3KD0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KD0, from MSDmotif at EBI
  • Fold representative 3kd0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kd0] [3kd0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KD0
  • Community annotation for 3KD0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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