3KDB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	006, GOL	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	How much binding affinity can be gained by filling a cavity?, Kawasaki Y, Chufan EE, Lafont V, Hidaka K, Kiso Y, Mario Amzel L, Freire E, Chem Biol Drug Des. 2010 Feb;75(2):143-51. Epub 2009 Dec 17. PMID:20028396

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (3kdb.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 3KDB CSU: Contacts of Structural Units for 3KDB Structure Factors (183 Kb) Retrieve 3KDB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KDB from S2C, [Save to disk] Re-refined 3kdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KDB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kdb] [3kdb_A] [3kdb_B] SWISS-PROT database:

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