3KDM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PCA, TES enzyme
Primary referenceThe testosterone binding mechanism of an antibody derived from a naive human scFv library., Niemi MH, Takkinen K, Amundsen LK, Soderlund H, Rouvinen J, Hoyhtya M, J Mol Recognit. 2011 Mar-Apr;24(2):209-19. doi: 10.1002/jmr.1039. PMID:21360611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (3kdm.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (3kdm.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3KDM
  • CSU: Contacts of Structural Units for 3KDM
  • Structure Factors (978 Kb)
  • Retrieve 3KDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KDM from S2C, [Save to disk]
  • Re-refined 3kdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kdm] [3kdm_A] [3kdm_B] [3kdm_H] [3kdm_L]
  • SWISS-PROT database:
  • Domains found in 3KDM: [IG_like] [IGv ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science