3KDT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 7HA BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceDiscovery of an oxybenzylglycine based peroxisome proliferator activated receptor alpha selective agonist 2-((3-((2-(4-chlorophenyl)-5-methyloxazol-4-yl)methoxy)benzyl)(methoxycarb onyl)amino)acetic acid (BMS-687453)., Li J, Kennedy LJ, Shi Y, Tao S, Ye XY, Chen SY, Wang Y, Hernandez AS, Wang W, Devasthale PV, Chen S, Lai Z, Zhang H, Wu S, Smirk RA, Bolton SA, Ryono DE, Zhang H, Lim NK, Chen BC, Locke KT, O'Malley KM, Zhang L, Srivastava RA, Miao B, Meyers DS, Monshizadegan H, Search D, Grimm D, Zhang R, Harrity T, Kunselman LK, Cap M, Kadiyala P, Hosagrahara V, Zhang L, Xu C, Li YX, Muckelbauer JK, Chang C, An Y, Krystek SR, Blanar MA, Zahler R, Mukherjee R, Cheng PT, Tino JA, J Med Chem. 2010 Apr 8;53(7):2854-64. PMID:20218621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3kdt.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3kdt.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (3kdt.pdb3.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3KDT
  • CSU: Contacts of Structural Units for 3KDT
  • Structure Factors (230 Kb)
  • Retrieve 3KDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KDT from S2C, [Save to disk]
  • Re-refined 3kdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kdt] [3kdt_A] [3kdt_B]
  • SWISS-PROT database:
  • Domain found in 3KDT: [HOLI ] by SMART

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