3KE0 Hydrolase date Oct 23, 2009
title Crystal Structure Of N370s Glucocerebrosidase At Acidic Ph.
authors R.R.Wei, S.Boucher, C.Q.Pan, T.Edmunds
compound source
Molecule: Glucosylceramidase
Chain: A, B
Synonym: Beta-Glucocerebrosidase, Acid Beta-Glucosidase, D- N-Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase
Ec: 3.2.1.45
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gba, Gc, Gluc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.172 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.465 285.064 92.225 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand GOL, NAG, NDG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (3ke0.pdb1.gz) 166 Kb
  • Biological Unit Coordinates (3ke0.pdb2.gz) 167 Kb
  • Biological Unit Coordinates (3ke0.pdb3.gz) 330 Kb
  • LPC: Ligand-Protein Contacts for 3KE0
  • CSU: Contacts of Structural Units for 3KE0
  • Structure Factors (661 Kb)
  • Retrieve 3KE0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KE0 from S2C, [Save to disk]
  • Re-refined 3ke0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KE0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KE0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KE0, from MSDmotif at EBI
  • Fold representative 3ke0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ke0_B] [3ke0_A] [3ke0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3KE0 with the sequences similar proteins can be viewed for 3KE0's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3KE0
  • Community annotation for 3KE0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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