3KEH Hydrolase date Oct 26, 2009
title Crystal Structure Of N370s Glucocerebrosidase Mutant At Ph 7
authors R.R.Wei, S.Boucher, C.Q.Pan, T.Edmunds
compound source
Molecule: Glucocerebrosidase
Chain: A, B
Synonym: Beta-Glucocerebrosidase, Acid Beta-Glucosidase, D- N-Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase
Ec: 3.2.1.45
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gba, Gc, Gluc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.212 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.830 285.920 92.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand GOL, NAG, NDG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (3keh.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (3keh.pdb2.gz) 161 Kb
  • Biological Unit Coordinates (3keh.pdb3.gz) 318 Kb
  • LPC: Ligand-Protein Contacts for 3KEH
  • CSU: Contacts of Structural Units for 3KEH
  • Structure Factors (562 Kb)
  • Retrieve 3KEH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KEH from S2C, [Save to disk]
  • Re-refined 3keh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KEH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KEH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KEH, from MSDmotif at EBI
  • Fold representative 3keh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3keh_A] [3keh_B] [3keh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3KEH with the sequences similar proteins can be viewed for 3KEH's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3KEH
  • Community annotation for 3KEH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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