3KEV Structural Genomics, Unknown Function date Oct 26, 2009
title X-Ray Crystal Structure Of A Dcun1 Domain-Containing Protein Galdieria Sulfuraria
authors E.S.Burgie, C.A.Bingman, G.N.Phillips Jr., Center For Eukaryoti Structural Genomics (Cesg)
compound source
Molecule: Galieria Sulfuraria Dcun1 Domain-Containing Prote
Chain: A
Engineered: Yes
 Organism_scientific: Galdieria Sulphuraria
Organism_common: Red Algae
Organism_taxid: 130081
Expression_system: Cell-Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peu-His-Flexi
Other_details: Wheat Germ Cell Free
symmetry Space Group: P 1 21 1
R_factor 0.155 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.743 52.422 49.113 90.00 111.17 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ACT, CSO, MSE, SO4 enzyme
note 3KEV is a representative structure
Primary referenceStructural architecture of Galdieria sulphuraria DCN1L., Sethe Burgie E, Bingman CA, Makino S, Wesenberg GE, Pan X, Fox BG, Phillips GN Jr, Proteins. 2011 Apr;79(4):1329-36. doi: 10.1002/prot.22937. Epub 2011 Jan, 18. PMID:21387409
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3kev.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3KEV
  • CSU: Contacts of Structural Units for 3KEV
  • Structure Factors (1319 Kb)
  • Retrieve 3KEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KEV from S2C, [Save to disk]
  • Re-refined 3kev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KEV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KEV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kev] [3kev_A]
  • SWISS-PROT database: [D1MPT4]
  • Domain organization of [D1MPT4_GALSU] by SWISSPFAM
    • Other resources with information on 3KEV
  • Community annotation for 3KEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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