3KFV Cell Adhesion date Oct 28, 2009
title Crystal Structure Of The Sh3-Kinase Fragment Of Tight Juncti (Tjp3) In Apo-Form
authors Y.Tong, L.Nedyalkova, W.Tempel, N.Zhong, X.Guan, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Tight Junction Protein Zo-3
Chain: A
Fragment: Sh3 And Guanylate Kinase-Like Domain Residues 489
Synonym: Zonula Occludens Protein 3, Zona Occludens Protein Junction Protein 3;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tjp3, Zo3
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
symmetry Space Group: P 4 2 2
R_factor 0.222 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.654 88.654 92.311 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MSE, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3kfv.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3KFV
  • CSU: Contacts of Structural Units for 3KFV
  • Structure Factors (230 Kb)
  • Retrieve 3KFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KFV from S2C, [Save to disk]
  • Re-refined 3kfv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KFV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KFV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kfv_A] [3kfv]
  • SWISS-PROT database: [O95049]
  • Domain organization of [ZO3_HUMAN] by SWISSPFAM
  • Domains found in 3KFV: [GuKc] [SH3 ] by SMART
    • Other resources with information on 3KFV
  • Community annotation for 3KFV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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