3KH9 Oxidoreductase date Oct 30, 2009
title Crystal Structure Of The Periplasmic Soluble Domain Of Oxidi From Pseudomonas Aeruginosa
authors A.Di Matteo, N.Calosci, S.Gianni, P.Jemth, M.Brunori, C.Travaglin Allocatelli
compound source
Molecule: Thiol:Disulfide Interchange Protein Dsbe
Chain: A
Fragment: Soluble Domain Residues 26-180
Synonym: Cytochrome C Biogenesis Protein Ccmg
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Strain: Pao1
Gene: Ccmg, Dsbe, Pa1481
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet28
symmetry Space Group: P 41 21 2
R_factor 0.190 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.099 74.099 65.229 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional characterization of CcmG from Pseudomonas aeruginosa, a key component of the bacterial cytochrome c maturation apparatus., Di Matteo A, Calosci N, Gianni S, Jemth P, Brunori M, Travaglini-Allocatelli C, Proteins. 2010 Aug 1;78(10):2213-21. PMID:20544959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3kh9.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 3KH9
  • Structure Factors (486 Kb)
  • Retrieve 3KH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KH9 from S2C, [Save to disk]
  • Re-refined 3kh9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KH9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KH9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kh9] [3kh9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3KH9
  • Community annotation for 3KH9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science