3KHF Transferase date Oct 30, 2009
title The Crystal Structure Of The Pdz Domain Of Human Microtubule Associated Serinethreonine Kinase 3 (Mast3)
authors A.Roos, J.Elkins, P.Savitsky, J.Wang, E.Ugochukwu, J.Murray, C.Bou C.H.Arrowsmith, J.Weigelt, A.Edwards, F.Von Delft, S.Knapp, Stru Genomics Consortium (Sgc)
compound source
Molecule: Microtubule-Associated Serinethreonine-Protein K
Chain: A, B
Fragment: Mast3
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0561, Mast3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.156 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.650 55.537 59.387 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CL, EDO enzyme Transferase E.C.2.7.11.1 BRENDA
note 3KHF is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (3khf.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3khf.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (3khf.pdb3.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3KHF
  • CSU: Contacts of Structural Units for 3KHF
  • Structure Factors (696 Kb)
  • Retrieve 3KHF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KHF from S2C, [Save to disk]
  • Re-refined 3khf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KHF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KHF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KHF, from MSDmotif at EBI
  • Fold representative 3khf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3khf_A] [3khf_B] [3khf]
  • SWISS-PROT database: [O60307]
  • Domain organization of [MAST3_HUMAN] by SWISSPFAM
  • Domain found in 3KHF: [PDZ ] by SMART
  • Other resources with information on 3KHF
  • Community annotation for 3KHF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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