3KIV Kringle date Sep 08, 1998
title Recombinant Kringle Iv-10m66 Variant Of Human Apolipoprotei
authors I.Mochalkin, A.Tulinsky, A.Scanu
compound source
Molecule: Apolipoprotein
Chain: A
Fragment: Kringle Iv-10
Engineered: Yes
Other_details: Kiv-10t66 Variant Of Human Apolipoprotein(A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.300 45.670 63.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACA enzyme
related structures by homologous chain: 1KRN, 1PK4
Primary referenceRecombinant kringle IV-10 modules of human apolipoprotein(a): structure, ligand binding modes, and biological relevance., Mochalkin I, Cheng B, Klezovitch O, Scanu AM, Tulinsky A, Biochemistry 1999 Feb 16;38(7):1990-8. PMID:10026282
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (3kiv.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 3KIV
  • CSU: Contacts of Structural Units for 3KIV
  • Likely Quarternary Molecular Structure file(s) for 3KIV
  • Retrieve 3KIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KIV from S2C, [Save to disk]
  • View 3KIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KIV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KIV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3kiv__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kiv_A] [3kiv]
  • SWISS-PROT database: [P08519]
  • Domain organization of [APOA_HUMAN] by SWISSPFAM
  • Domain found in 3KIV: [KR ] by SMART
  • Other resources with information on 3KIV
  • Community annotation for 3KIV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 3KIV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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