3KJ0 Apoptosis date Nov 02, 2009
title Mcl-1 In Complex With Bim Bh3 Mutant I2dy
authors E.Fire, R.A.Grant, A.E.Keating
compound source
Molecule: Induced Myeloid Leukemia Cell Differentiation Pro 1;
Chain: A
Fragment: (Unp 172-326)
Synonym: Bcl-2-Related Protein Eatmcl1, Mcl1eat, Bcl-2-Li 3, Bcl2-L-3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2l3, Mcl-1, Mcl1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psv282

Molecule: Bcl-2-Like Protein 11
Chain: B
Fragment: Bh3 Region Of Bim (Unp 1-23)
Synonym: Bcl2-L-11, Bcl2-Interacting Mediator Of Cell Death
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2l11, Bim
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psv282
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.381 52.943 69.373 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMcl-1-Bim complexes accommodate surprising point mutations via minor structural changes., Fire E, Gulla SV, Grant RA, Keating AE, Protein Sci. 2010 Jan 11. PMID:20066663
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3kj0.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3KJ0
  • CSU: Contacts of Structural Units for 3KJ0
  • Structure Factors (116 Kb)
  • Retrieve 3KJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KJ0 from S2C, [Save to disk]
  • Re-refined 3kj0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KJ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KJ0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kj0_B] [3kj0] [3kj0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KJ0: [BCL ] by SMART
  • Other resources with information on 3KJ0
  • Community annotation for 3KJ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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