3KJ6 Signaling Protein date Nov 02, 2009
title Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Complex
authors M.P.Bokoch, Y.Zou, S.G.F.Rasmussen, C.W.Liu, R.Nygaard, D.M.Rosen J.J.Fung, H.J.Choi, F.S.Thian, T.S.Kobilka, J.D.Puglisi, W.I.We L.Pardo, S.Prosser, L.Mueller, B.K.Kobilka
compound source
Molecule: Beta-2 Adrenergic Receptor
Chain: A
Synonym: Beta-2 Adrenoreceptor, Beta-2 Adrenoceptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adrb2, Adrb2r, B2ar
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma

Molecule: Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
338.600 48.600 88.900 90.00 104.40 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLigand-specific regulation of the extracellular surface of a G-protein-coupled receptor., Bokoch MP, Zou Y, Rasmussen SG, Liu CW, Nygaard R, Rosenbaum DM, Fung JJ, Choi HJ, Thian FS, Kobilka TS, Puglisi JD, Weis WI, Pardo L, Prosser RS, Mueller L, Kobilka BK, Nature. 2010 Jan 7;463(7277):108-12. PMID:20054398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (3kj6.pdb1.gz) 218 Kb
  • LPC: Ligand-Protein Contacts for 3KJ6
  • CSU: Contacts of Structural Units for 3KJ6
  • Structure Factors (252 Kb)
  • Retrieve 3KJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KJ6 from S2C, [Save to disk]
  • Re-refined 3kj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KJ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KJ6, from MSDmotif at EBI
  • Fold representative 3kj6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kj6_A] [3kj6_H] [3kj6_L] [3kj6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3KJ6: [IG_like] [IGv ] by SMART
  • Other resources with information on 3KJ6
  • Community annotation for 3KJ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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