3KJF	Hydrolase	date	Nov 03, 2009
title	Caspase 3 Bound To A Covalent Inhibitor
authors	S.Kamtekar, W.Watt, B.C.Finzel, M.S.Harris, J.Blinn, Z.Wang, A.G.T
compound		source
Molecule: Caspase-3 Chain: A Synonym: Casp-3, Apopain, Cysteine Protease Cpp32, Cpp-32, Protein, Srebp Cleavage Activity 1, Sca-1, Caspase-3 Subuni Caspase-3 Subunit P12; Ec: 3.4.22.56 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Casp3, Cpp32 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Caspase-3 Chain: B Synonym: Casp-3, Apopain, Cysteine Protease Cpp32, Cpp-32, Protein, Srebp Cleavage Activity 1, Sca-1, Caspase-3 Subuni Caspase-3 Subunit P12; Ec: 3.4.22.56 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Casp3, Cpp32 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.181 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.690 68.160 44.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	B92	enzyme	Hydrolase E.C.3.4.22.56 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Kinetic and structural characterization of caspase-3 and caspase-8 inhibition by a novel class of irreversible inhibitors., Wang Z, Watt W, Brooks NA, Harris MS, Urban J, Boatman D, McMillan M, Kahn M, Heinrikson RL, Finzel BC, Wittwer AJ, Blinn J, Kamtekar S, Tomasselli AG, Biochim Biophys Acta. 2010 Sep;1804(9):1817-1831. Epub 2010 May 24. PMID:20580860

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3kjf.pdb1.gz) 85 Kb LPC: Ligand-Protein Contacts for 3KJF CSU: Contacts of Structural Units for 3KJF Structure Factors (292 Kb) Retrieve 3KJF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KJF from S2C, [Save to disk] Re-refined 3kjf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KJF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KJF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KJF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kjf_B] [3kjf_A] [3kjf] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3KJF: [CASc ] by SMART

Other resources with information on 3KJF

Community annotation for 3KJF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---