3KLT Structural Protein date Nov 09, 2009
title Crystal Structure Of A Vimentin Fragment
authors S.Nicolet, S.V.Strelkov
compound source
Molecule: Vimentin
Chain: A, B, C, D
Fragment: Unp Residues 263-334
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vim
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Tev
symmetry Space Group: P 1 21 1
R_factor 0.291 R_Free 0.331
length a length b length c angle alpha angle beta angle gamma
63.200 30.100 82.980 90.00 102.71 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 1PE, CA, P33, P6G, PG4, PGE, SM enzyme
A, D, C, B

Primary referenceAtomic structure of vimentin coil 2., Nicolet S, Herrmann H, Aebi U, Strelkov SV, J Struct Biol. 2010 May;170(2):369-76. Epub 2010 Feb 20. PMID:20176112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3klt.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3klt.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (3klt.pdb3.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3KLT
  • CSU: Contacts of Structural Units for 3KLT
  • Structure Factors (90 Kb)
  • Retrieve 3KLT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KLT from S2C, [Save to disk]
  • Re-refined 3klt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KLT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KLT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KLT, from MSDmotif at EBI
  • Fold representative 3klt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3klt_D] [3klt_B] [3klt_A] [3klt_C] [3klt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KLT
  • Community annotation for 3KLT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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