3KMC Hydrolase date Nov 10, 2009
title Crystal Structure Of Catalytic Domain Of Tace With Tartrate- Inhibitor
authors P.Orth
compound source
Molecule: Tnf-Alpha-Converting Enzyme
Chain: A, B
Fragment: Residues 215-476
Synonym: Adam 17, Disintegrin And Metalloproteinase Domain- Protein 17, Tnf-Alpha Convertase, Snake Venom-Like Protease
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.313 76.103 103.768 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 403, INN, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe discovery of novel tartrate-based TNF-alpha converting enzyme (TACE) inhibitors., Rosner KE, Guo Z, Orth P, Shipps GW Jr, Belanger DB, Chan TY, Curran PJ, Dai C, Deng Y, Girijavallabhan VM, Hong L, Lavey BJ, Lee JF, Li D, Liu Z, Popovici-Muller J, Ting PC, Vaccaro H, Wang L, Wang T, Yu W, Zhou G, Niu X, Sun J, Kozlowski JA, Lundell DJ, Madison V, McKittrick B, Piwinski JJ, Shih NY, Arshad Siddiqui M, Strickland CO, Bioorg Med Chem Lett. 2009 Dec 5. PMID:20022498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3kmc.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3kmc.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3KMC
  • CSU: Contacts of Structural Units for 3KMC
  • Structure Factors (1175 Kb)
  • Retrieve 3KMC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KMC from S2C, [Save to disk]
  • Re-refined 3kmc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KMC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KMC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KMC, from MSDmotif at EBI
  • Fold representative 3kmc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kmc] [3kmc_A] [3kmc_B]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 3KMC
  • Community annotation for 3KMC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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