3KME Hydrolase date Nov 10, 2009
title Crystal Structure Of Catalytic Domain Of Tace With Phenyl- Pyrrolidinyl-Tartrate Inhibitor
authors P.Orth
compound source
Molecule: Tnf-Alpha-Converting Enzyme
Chain: A, B
Fragment: Residues 215-476
Synonym: Adam 17, Disintegrin And Metalloproteinase Domain- Protein 17, Tnf-Alpha Convertase, Snake Venom-Like Protease
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.225
length a length b length c angle alpha angle beta angle gamma
71.485 76.213 104.722 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand INN, IPA, Z59, ZN enzyme Hydrolase E.C. BRENDA
A, B

Primary referenceThe discovery of novel tartrate-based TNF-alpha converting enzyme (TACE) inhibitors., Rosner KE, Guo Z, Orth P, Shipps GW Jr, Belanger DB, Chan TY, Curran PJ, Dai C, Deng Y, Girijavallabhan VM, Hong L, Lavey BJ, Lee JF, Li D, Liu Z, Popovici-Muller J, Ting PC, Vaccaro H, Wang L, Wang T, Yu W, Zhou G, Niu X, Sun J, Kozlowski JA, Lundell DJ, Madison V, McKittrick B, Piwinski JJ, Shih NY, Arshad Siddiqui M, Strickland CO, Bioorg Med Chem Lett. 2009 Dec 5. PMID:20022498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3kme.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3kme.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3KME
  • CSU: Contacts of Structural Units for 3KME
  • Structure Factors (1119 Kb)
  • Retrieve 3KME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KME from S2C, [Save to disk]
  • Re-refined 3kme structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KME
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KME, from MSDmotif at EBI
  • Fold representative 3kme from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kme] [3kme_A] [3kme_B]
  • SWISS-PROT database: [P78536]
  • Belongs to the sheddase (sheddase) family according to TCDB.
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 3KME
  • Community annotation for 3KME at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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