3KMU Cell Adhesion date Nov 11, 2009
title Crystal Structure Of The Ilkalpha-Parvin Core Complex (Apo)
authors K.Fukuda, J.Qin
compound source
Molecule: Integrin-Linked Kinase
Chain: A
Fragment: C-Terminal Pseudokinase Domain: Unp Residues 183- 452;
Synonym: Ilk
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ilk, Ilk1, Ilk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Alpha-Parvin
Chain: B
Fragment: C-Terminal Calponin Homology Domain: Unp Residues 248-372;
Synonym: Calponin-Like Integrin-Linked Kinase-Binding Protein, Ch-Ilkbp, Matrix-Remodeling-Associated Protein 2, Actopaxin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parva, Mxra2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.380 117.715 47.344 90.00 101.68 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe pseudoactive site of ILK is essential for its binding to alpha-Parvin and localization to focal adhesions., Fukuda K, Gupta S, Chen K, Wu C, Qin J, Mol Cell. 2009 Dec 11;36(5):819-30. PMID:20005845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3kmu.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3KMU
  • CSU: Contacts of Structural Units for 3KMU
  • Structure Factors (553 Kb)
  • Retrieve 3KMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KMU from S2C, [Save to disk]
  • Re-refined 3kmu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KMU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KMU, from MSDmotif at EBI
  • Fold representative 3kmu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kmu] [3kmu_A] [3kmu_B]
  • SWISS-PROT database: [Q13418] [Q9NVD7]
  • Domain organization of [ILK_HUMAN] [PARVA_HUMAN] by SWISSPFAM
  • Domains found in 3KMU: [CH] [STYKc ] by SMART
  • Other resources with information on 3KMU
  • Community annotation for 3KMU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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