3KMW Cell Adhesion date Nov 11, 2009
title Crystal Structure Of The Ilkalpha-Parvin Core Complex (Mgat
authors K.Fukuda, J.Qin
compound source
Molecule: Integrin-Linked Kinase
Chain: A
Fragment: C-Terminal Pseudokinase Domain: Unp Residues 183-
Synonym: Ilk
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ilk, Ilk1, Ilk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39

Molecule: Alpha-Parvin
Chain: B
Fragment: C-Terminal Calponin Homology Domain: Unp Residues
Synonym: Calponin-Like Integrin-Linked Kinase-Binding Prote Ilkbp, Matrix-Remodeling-Associated Protein 2, Actopaxin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parva, Mxra2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pst39
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.134 117.103 47.393 90.00 101.96 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe pseudoactive site of ILK is essential for its binding to alpha-Parvin and localization to focal adhesions., Fukuda K, Gupta S, Chen K, Wu C, Qin J, Mol Cell. 2009 Dec 11;36(5):819-30. PMID:20005845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3kmw.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3KMW
  • CSU: Contacts of Structural Units for 3KMW
  • Structure Factors (445 Kb)
  • Retrieve 3KMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KMW from S2C, [Save to disk]
  • Re-refined 3kmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KMW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KMW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kmw_A] [3kmw_B] [3kmw]
  • SWISS-PROT database: [Q13418] [Q9NVD7]
  • Domain organization of [ILK_HUMAN] [PARVA_HUMAN] by SWISSPFAM
  • Domains found in 3KMW: [CH] [STYKc ] by SMART
  • Other resources with information on 3KMW
  • Community annotation for 3KMW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science