3KOV	Transcription Dna	date	Nov 14, 2009
title	Structure Of Mef2a Bound To Dna Reveals A Completely Folded Boxmef2 Domain That Recognizes Dna And Recruits Transcript Factors
authors	Y.Wu, R.Dey, A.Han, N.Jayathilaka, M.Philips, J.Ye, L.Chen
compound		source
Molecule: Myocyte-Specific Enhancer Factor 2a Chain: A, B, I, J Synonym: Serum Response Factor-Like Protein 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mef2a, Mef2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Apapcptpaptptptpaptpapapg) Chain: C, K Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Tpcptptpaptpapapaptpapgpt) Chain: D, L Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 2	R_factor 0.221 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.801 77.960 106.794 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A, J, I, B
Primary reference	Structure of the MADS-box/MEF2 Domain of MEF2A Bound to DNA and Its Implication for Myocardin Recruitment., Wu Y, Dey R, Han A, Jayathilaka N, Philips M, Ye J, Chen L, J Mol Biol. 2010 Feb 2. PMID:20132824

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (3kov.pdb1.gz) 109 Kb Biological Unit Coordinates (3kov.pdb2.gz) 84 Kb CSU: Contacts of Structural Units for 3KOV Structure Factors (100 Kb) Retrieve 3KOV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KOV from S2C, [Save to disk] Re-refined 3kov structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KOV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KOV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KOV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kov] [3kov_C] [3kov_D] [3kov_I] [3kov_A] [3kov_K] [3kov_B] [3kov_L] [3kov_J] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3KOV: [MADS ] by SMART

Other resources with information on 3KOV

Community annotation for 3KOV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---