3KPD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MTA, SAM enzyme
Primary referenceBinding of S-methyl-5'-thioadenosine and S-adenosyl-L-methionine to protein MJ0100 triggers an open-to-closed conformational change in its CBS motif pair., Lucas M, Encinar JA, Arribas EA, Oyenarte I, Garcia IG, Kortazar D, Fernandez JA, Mato JM, Martinez-Chantar ML, Martinez-Cruz LA, J Mol Biol. 2010 Feb 26;396(3):800-20. Epub 2009 Dec 21. PMID:20026078
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3kpd.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (3kpd.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3kpd.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3KPD
  • CSU: Contacts of Structural Units for 3KPD
  • Structure Factors (209 Kb)
  • Retrieve 3KPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KPD from S2C, [Save to disk]
  • Re-refined 3kpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kpd] [3kpd_A] [3kpd_B] [3kpd_C] [3kpd_D]
  • SWISS-PROT database: [Q57564]
  • Domain found in 3KPD: [CBS ] by SMART

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