3KQ6 Hormone date Nov 17, 2009
title Enhancing The Therapeutic Properties Of A Protein By A Desig Binding Site, Structural Principles Of A Novel Long-Acting Analog
authors Z.L.Wan, S.Q.Hu, L.Whittaker, N.B.Phillips, J.Whittake, F.Ismail- M.A.Weiss
compound source
Molecule: Insulin A Chain
Chain: A, C
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Biosynthetic Peptide

Molecule: Insulin B Chain
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Biosynthetic Peptide
symmetry Space Group: H 3
R_factor 0.199 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.091 78.091 36.399 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, IPH, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceSupramolecular protein engineering: design of zinc-stapled insulin hexamers as a long acting depot., Phillips NB, Wan ZL, Whittaker L, Hu SQ, Huang K, Hua QX, Whittaker J, Ismail-Beigi F, Weiss MA, J Biol Chem. 2010 Apr 16;285(16):11755-9. Epub 2010 Feb 24. PMID:20181952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (3kq6.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3KQ6
  • CSU: Contacts of Structural Units for 3KQ6
  • Structure Factors (75 Kb)
  • Retrieve 3KQ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KQ6 from S2C, [Save to disk]
  • Re-refined 3kq6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KQ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KQ6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KQ6, from MSDmotif at EBI
  • Fold representative 3kq6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kq6_A] [3kq6] [3kq6_C] [3kq6_D] [3kq6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KQ6: [IlGF ] by SMART
  • Other resources with information on 3KQ6
  • Community annotation for 3KQ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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