OCA Atlas for 3KRL

3KRL

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

KRL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Optimization of a Potent Class of Arylamide Colony-Stimulating Factor-1 Receptor Inhibitors Leading to Anti-inflammatory Clinical Candidate 4-Cyano-N-[2-(1-cyclohexen-1-yl)-4-[1-[(dimethylamino)acetyl]-4-piperidiny l]phenyl]-1H-imidazole-2-carboxamide (JNJ-28312141)., Illig CR, Manthey CL, Wall MJ, Meegalla SK, Chen J, Wilson KJ, Ballentine SK, Desjarlais RL, Schubert C, Crysler CS, Chen Y, Molloy CJ, Chaikin MA, Donatelli RR, Yurkow E, Zhou Z, Player MR, Tomczuk BE, J Med Chem. 2011 Nov 24;54(22):7860-83. Epub 2011 Oct 31. PMID:22039836

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]

Biological Unit Coordinates (3krl.pdb1.gz) 138 Kb

LPC: Ligand-Protein Contacts for 3KRL

CSU: Contacts of Structural Units for 3KRL

Structure Factors (225 Kb)

Retrieve 3KRL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3KRL from S2C, [Save to disk]

Re-refined 3krl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KRL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3krl] [3krl_A]

SWISS-PROT database:

Domain found in 3KRL: [TyrKc ] by SMART

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