3KTS Transcriptional Regulator date Nov 25, 2009
title Crystal Structure Of Glycerol Uptake Operon Antiterminator R Protein From Listeria Monocytogenes Str. 4b F2365
authors Y.Patskovsky, R.Toro, J.Freeman, J.Do, J.M.Sauder, S.K.Burley, S.C York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Glycerol Uptake Operon Antiterminator Regulatory
Chain: A, B, C, D, E, F, G, H
Synonym: G3p Antiterminator
Engineered: Yes
Organism_scientific: Listeria Monocytogenes Str. 4b
Organism_taxid: 265669
Strain: F2365
Gene: Glpp, Lmof2365_1424
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.603 110.599 130.971 90.00 116.44 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand UNL enzyme
Gene LMOF2365
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (3kts.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3kts.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (3kts.pdb3.gz) 32 Kb
  • Biological Unit Coordinates (3kts.pdb4.gz) 32 Kb
  • Biological Unit Coordinates (3kts.pdb5.gz) 32 Kb
  • Biological Unit Coordinates (3kts.pdb6.gz) 31 Kb
  • Biological Unit Coordinates (3kts.pdb7.gz) 32 Kb
  • Biological Unit Coordinates (3kts.pdb8.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3KTS
  • CSU: Contacts of Structural Units for 3KTS
  • Structure Factors (933 Kb)
  • Retrieve 3KTS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KTS from S2C, [Save to disk]
  • Re-refined 3kts structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KTS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KTS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KTS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kts_A] [3kts_H] [3kts] [3kts_D] [3kts_E] [3kts_F] [3kts_C] [3kts_G] [3kts_B]
  • SWISS-PROT database: [Q71ZR5]
  • Domain organization of [Q71ZR5_LISMF] by SWISSPFAM
  • Other resources with information on 3KTS
  • Community annotation for 3KTS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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