3KUF Protein Binding date Nov 27, 2009
title The Crystal Structure Of The Tudor Domains From Fxr1
authors C.Bian, Y.H.Guo, M.A.Adams-Cioaba, F.Mackenzie, I.Kozieradzki, C. J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Stru Genomics Consortium (Sgc)
compound source
Molecule: Fragile X Mental Retardation Syndrome-Related Pro
Chain: A
Fragment: Unp Residues 2-132
Synonym: Hfxr1p
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fxr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prare2
symmetry Space Group: H 3
R_factor 0.248 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.102 73.102 94.412 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand DTT, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3kuf.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3KUF
  • CSU: Contacts of Structural Units for 3KUF
  • Structure Factors (80 Kb)
  • Retrieve 3KUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUF from S2C, [Save to disk]
  • Re-refined 3kuf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KUF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KUF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kuf_A] [3kuf]
  • SWISS-PROT database: [P51114]
  • Domain organization of [FXR1_HUMAN] by SWISSPFAM
    • Other resources with information on 3KUF
  • Community annotation for 3KUF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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