3KUH Transferase date Nov 27, 2009
title Crystal Structure Of E. Coli Hppk(H115a) In Complex With Amp
authors J.Blaszczyk, Y.Li, H.Yan, X.Ji
compound source
Molecule: 2-Amino-4-Hydroxy-6-Hydroxymethyldihydropteridine Pyrophosphokinase;
Chain: A
Synonym: 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinas 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase, Pppk;
Ec: 2.7.6.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: B0142, Foik, Folk, Jw0138
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: C 1 2 1
R_factor 0.128 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.720 38.340 57.900 90.00 116.90 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand ACT, APC, CL, MG, PH2 enzyme Transferase E.C.2.7.6.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3kuh.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3KUH
  • CSU: Contacts of Structural Units for 3KUH
  • Structure Factors (227 Kb)
  • Retrieve 3KUH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUH from S2C, [Save to disk]
  • Re-refined 3kuh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KUH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KUH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KUH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kuh_A] [3kuh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KUH
  • Community annotation for 3KUH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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