3KUT Protein Binding date Nov 27, 2009
title Crystal Structure Of The Mlle Domain Of Poly(A)-Binding Prot Complex With The Binding Region Of Paip2
authors G.Kozlov, K.Gehring
compound source
Molecule: Polyadenylate-Binding Protein 1
Chain: A, B
Fragment: C-Terminal Domain
Synonym: Poly(A)-Binding Protein 1, Pabp 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pabpc1, Pab1, Pabp1, Pabpc2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: Paip2 Protein
Chain: C, D
Fragment: Pabpc1-Binding Region
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemically Synthesized
symmetry Space Group: P 1
R_factor 0.168 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.309 31.748 48.454 100.29 90.37 99.05
method X-Ray Diffractionresolution 1.50 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular Determinants of PAM2 Recognition by the MLLE Domain of Poly(A)-Binding Protein., Kozlov G, Menade M, Rosenauer A, Nguyen L, Gehring K, J Mol Biol. 2010 Jan 22. PMID:20096703
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3kut.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (3kut.pdb2.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 3KUT
  • CSU: Contacts of Structural Units for 3KUT
  • Structure Factors (338 Kb)
  • Retrieve 3KUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUT from S2C, [Save to disk]
  • Re-refined 3kut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KUT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KUT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kut_D] [3kut_C] [3kut] [3kut_A] [3kut_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KUT: [PolyA ] by SMART
  • Other resources with information on 3KUT
  • Community annotation for 3KUT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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