3KUZ Signaling Protein date Nov 28, 2009
title Crystal Structure Of The Ubiquitin Like Domain Of Plxnc1
authors H.Wang, B.Li, W.Tempel, Y.Tong, X.Guan, N.Zhong, L.Crombet, F.Macke M.Buck, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Boc H.Park, Structural Genomics Consortium (Sgc)
compound source
Molecule: Plexin-C1
Chain: A, B
Synonym: Virus-Encoded Semaphorin Protein Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plxnc1, Vespr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl (Gi:134105571)
symmetry Space Group: P 43 21 2
R_factor 0.250 R_Free 0.280
length a length b length c angle alpha angle beta angle gamma
72.246 72.246 116.235 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand UNX enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3kuz.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3KUZ
  • CSU: Contacts of Structural Units for 3KUZ
  • Structure Factors (212 Kb)
  • Retrieve 3KUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KUZ from S2C, [Save to disk]
  • Re-refined 3kuz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KUZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KUZ, from MSDmotif at EBI
  • Fold representative 3kuz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kuz_A] [3kuz_B] [3kuz]
  • SWISS-PROT database: [O60486]
  • Domain organization of [PLXC1_HUMAN] by SWISSPFAM
  • Other resources with information on 3KUZ
  • Community annotation for 3KUZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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