3KXN Transferase Transferase Inhibitor date Dec 03, 2009
title Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In Com The Inhibitor Tetraiodobenzimidazole (K88)
authors E.Papinutto, C.Franchin, R.Battistutta
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A
Fragment: Alpha Subunit
Synonym: Ck2-Alpha, Ck II
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577
Gene: Ack2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.839 60.901 46.015 90.00 103.37 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand K8X enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtp Site-Directed Inhibitors of Protein Kinase Ck2: An Update., Sarno S, Papinutto E, Franchin C, Bain J, Elliott M, Meggio F, Kazimierczuk Z, Orzeszko A, Zanotti G, Battistutta R, Pinna LA, Curr Top Med Chem. 2011 Mar 29. PMID:21513497
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3kxn.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3KXN
  • CSU: Contacts of Structural Units for 3KXN
  • Structure Factors (1344 Kb)
  • Retrieve 3KXN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KXN from S2C, [Save to disk]
  • Re-refined 3kxn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KXN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KXN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KXN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kxn_A] [3kxn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3KXN: [S_TKc ] by SMART
  • Other resources with information on 3KXN
  • Community annotation for 3KXN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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